Day One

7:30 am Check In & Light Breakfast

8:20 am Chair’s Opening Remarks

Targeting Previously Undruggable Proteins with Rational Target Selection to Expand the Potential of Covalent Therapies

8:30 am Increasing the Scope of Covalent Drugs to Transcription Factors & Hard to Drug Proteins with Strategic Target Selection

  • Lata Jayaraman Head Senior VP, Oncology & Inflammation Research, Frontier Medicines

Synopsis

  • Defining what makes a good target considering half life, non-covalent secondary interactions and ligandability
  • Utilising modelling and ML to define pockets and calculate pocket size, solvent accessible surface area and PKa
  • Strategies to reach previously undruggable targets with covalent modalities

9:00 am Structural Biology & Computational Challenges in Covalent Targeting of Cryptic Pockets

  • Brendan Hilbert Director of Protein and Structural Sciences, Antares Therapeutics

Synopsis

  • Leveraging protein engineering to enable crystallography for transcription factors
  • Overcoming structural biology challenges due to shallow, dynamic pockets
  • Enabling covalent small molecule computational design

9:30 am Identification of Functional Covalent Hits with Novel Mechanisms of Action for Hard-to-Drug Targets

  • Jared Cumming Chief Scientific Officer, Matchpoint Therapeutics

Synopsis

  • Drugging elusive targets with high affinity, selectivity and tolerability
  • Strategies for target selection and warhead tuning to facilitate selective, potent binding

10:00 am Unlocking the Regulome for Covalent Drug Discovery using a High- Throughput Proteomics Platform

Synopsis

  • We developed regulome profiling, a platform to measure protein-chromatin binding activity of transcription factors and other chromatin-associated proteins from native cell contexts
  • Protein-chromatin binding measurements are validated using tool compounds and proteins, such as MEN1
  • Preliminary data from a covalent discovery program demonstrates androgen receptor and a splice variant can be reduced in prostate cancer by targeting the splicing factor NONO

10:30 am Morning Break & Speed Networking

Expanding the Druggable Proteome & Targeting Non-Cysteine Residues with Innovative Tools & Warhead Design to Expand Covalency Across More Indications

11:30 am Insights into Covalent Drug Discovery from FX-909

  • Jacob Stuckey Vice President - Biochemistry & Chemical Biology, Flare Therapeutics

Synopsis

  • FX-909 is a potent and selective inverse agonist of PPARG currently being explored in muscle-invasive luminal urothelial cancer
  • FX-909’s selectivity and in vivo properties are derived from the “context-dependent reactivity” exhibited by its unique warhead
  • Mechanistic investigations into covalent capture of PPARG were critical for the design and discovery of FX-909 and have also revealed insights into the physical basis of its “context-dependence”

12:00 pm Lysine-Targeted Covalent Probes with Residence-Time-Driven Selectivity

Synopsis

  • Developing lysine-reactive kinase probes that reversibly engage over 200 cellular kinases, enabling broad profiling
  • Engineering a salicylaldehyde-based probe that achieves residence-time-driven selectivity in cells and in vivo
  • Demonstrated in vivo target engagement of PF-06873600 using the salicylaldehyde probe, highlighting translational potential

12:30 pm Round Table: Investigating the Feasibility of Targeting Non-Cysteine Residues & Developing Rational Strategies to Drug New Target

Synopsis

  • Evaluating the suitably of non-cysteine residues for covalent targeting to assess feasibility of drugging novel proteins
  • Exploring the technological advancements required to effectively identify and target alternative amino acids
  • Optimizing warhead selectivity and potency to enable precise targeting whilst mitigating against off-target activity

1:00 pm Lunch & Networking

Optimizing Hit ID & Screening Capabilities with Chemoproteomics, Covalent Libraries & Computational Models to Identify Highly Promising Compounds

2:00 pm IMTAC™: A Chemoproteomic Platform for Covalent Ligand Discovery to Unlock Investigational Targets

  • Ning Deng Director, IMTAC Discovery, BridGene Biosciences Inc.

Synopsis

  • Leveraging covalent small-molecule libraries to rapidly identify diverse and hard-todrug targets
  • Live-cell screening under physiological conditions captures native protein conformations and complex cellular dynamics and enhances translational relevance by mimicking in vivo target environments
  • Key lessons learned and challenges overcome

2:30 pm Complementary Strategies for Covalent Hit Finding & Characterization

Synopsis

  • Strategic application of labelling- vs. function-first approaches for covalent hit finding in vitro and in cells
  • Chemoproteomics applications for hit characterization and determination of novel ligandable sites on targets of interest
  • Library considerations for covalent hit finding at Novartis

3:00 pm RAPID – Photoaffinity-Based High-Throughput Ligand Discovery in Cells

  • Matthew Labenski Senior Director - Proteomics & Chemical Biology, Jnana Therapeutics

Synopsis

  • Pivoting away from mass spec in favor of building a high-throughput chemotherapeutics hit identification platform
  • Discovery of first-in-class inhibitors of a genetically validated target for the treatment of PKU Discovery of the first inhibitors for transcription factor IRF3
  • Evolving the platform to work with other covalent warheads

3:30 pm Afternoon Break & Poster Session

Applying Unique Proteomics Insights & Adopting Computational Modelling to Derisk Pipelines & Streamline Translation from Bench to Bedside

4:30 pm Developing a Proteomics Toolkit for the Characterization of Covalent Drug Molecules

  • Fiona Pachl Associate Principal Scientist - Chemical Biology & Proteomics, AstraZeneca

Synopsis

  • Pivoting away from mass spec in favor of building a high-throughput chemoproteomics hit identification platform
  • Discovery of first-in-class inhibitors of a genetically validated target to treat PKU
  • Discovery of the first inhibitors for transcription factor IRF3
  • Evolving the platform to work with other covalent warheads

5:00 pm Computational & Machine Learning Approaches to Covalent Therapeutic Discovery

Synopsis

  • How can computational simulation and machine learning accelerate the discovery of potent and selective covalent therapeutics?
  • What are the limits of current approaches and which emerging techniques are showing promise?
  • How can new simulation methods reveal covalent binding kinetics and guidemolecular design?

5:30 pm End of Conference Day One

Explore the Full Event Guide

      • 19+ expert speakers
      • 7+ hours of dedicated networking
      • 3 days of data-driven, covalent specific content
      • 2 interactive, deep-dive workshops
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